https://www.pradiptaray.com/home daily 1.0 2025-09-27 https://www.pradiptaray.com/contact daily 0.75 2025-09-27 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/6a064a99-c8e6-4fc8-a448-2d55075c3c61/outlook_icon.png https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/e8498394-6cf0-485b-9d17-291b81f9e6c6/em_icon.png https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/72e3fe65-1294-49cc-b68a-57d9c3efc140/ig_icon.png https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/b79c0f33-ecfc-425f-87b3-3aecd630dbfb/gmail_icon.png https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/fbf01464-63a4-40c5-b6d3-a6da7c7b27ad/github_logo.png https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/84dd22d5-0abb-4384-8164-2a2faad40a1d/gsch_icon.png https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/302965dd-c3ba-438c-a541-83f0b8d911d1/www_icon.png https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/0fba427d-cac1-4d0e-b08e-a5b875bc03d5/li_icon.png https://www.pradiptaray.com/publications daily 0.75 2026-09-17 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/90bff278-baac-4ed4-b989-c5c1024eeb11/png_blood.png Publications Lisocabtagene maraleucel combined with ibrutinib in R/R CLL or SLL: primary results from TRANSCEND CLL 004, Blood, 2026 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/8ace9ad7-3fd3-4498-a70d-8bb84771b0a9/png_cellreportsmed.png Publications Pharmacodynamic changes in tumor and immune cells drive iberdomide’s clinical mechanisms of activity in relapsed and refractory multiple myeloma, Cell Reports Medicine, 2024 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/5bf6aa98-1deb-485a-b8ba-9b124015b9e1/png_brain.png Publications RNA Profiling of Neuropathic Pain-Associated Human DRGs Reveal Sex-differences in Neuro-immune Interactions Promoting Pain. Brain, 2022 (first author) https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/0a8846fb-5632-4762-9a83-96c96c0a653a/png_scirep.png Publications Transcriptomic Analysis of Human Sensory Neurons in Painful Diabetic Neuropathy Reveals Inflammation and Neuronal Loss. Scientific Reports, 2022 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/97963b78-272c-4029-a67c-51cc39d7d028/stm_cover.jpg Publications Spatial transcriptomics reveals unique molecular fingerprints of human nociceptors. Science Transl Medicine, 2022 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/ef6eb694-6e36-4de7-ad23-218f34134097/png_phyrep.png Publications RNA sequencing on muscle biopsy from a 5-week bedrest study reveals the effect of exercise and potential interactions with dorsal root ganglion neurons. Physiological Reports, 2022 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/02264748-9aa4-444f-85c4-6a7bf14e178b/png_jneurosci.png Publications Intercellular Arc signaling regulates vasodilation. J Neurosci, 2021 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/574d46a4-5bc0-4c86-af8d-fcf343f2183b/png_neuroscience.png Publications Diversity of receptor expression in central and peripheral mouse neurons estimated from single cell RNA sequencing. Neuroscience, 2021 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/ed97428a-dde8-49d6-b3d5-3d71fd31a68c/png_plosgenetics.png Publications Sex-Stratified Genome-Wide Association Study of Multisite Chronic Pain in UK Biobank. PLoS Genetics, 2021 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/8d8dda19-5a3b-424c-a2dc-41872722e62e/png_sciencesig_interactome.png Publications A ligand-receptor interactome platform for discovery of pain mechanisms and therapeutic targets. Science Signalling, 2021 (co-corresponding author) https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/c51d3d85-3393-45b8-9ed7-5184bfb8b2d3/png_brain.png Publications Review Studying human nociceptors: from fundamentals to the clinic. Brain, 2021 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/100389a1-0064-4aaf-ada4-62a21ccd750a/png_pain.png Publications A peptide encoded within a 5' untranslated region promotes pain sensitization in mice. PAIN, 2021 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/693e50c4-27cf-4741-aa68-bc583025323f/png_theranostics.png Publications Nasal administration of mitochondria reverses chemotherapy-induced cognitive deficits. Theranostics, 2021 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/8ee47c66-6c57-4fd9-97af-c40c81e2cecc/png_jnlpain.png Publications A role for protease activated receptor type 3 (PAR3) in nociception demonstrated through development of a novel peptide agonist. Journal of Pain, 2021 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/469911c8-84b6-4ff2-ad89-afa1cf2455bc/png_biopsy.png Publications Sex differences in nociceptor translatomes contribute to divergent prostaglandin signaling in male and female mice. Biological Psychiatry, 2020 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/309df9b3-5395-4432-ab23-834eacd02e1a/png_jciinsight.png Publications The cellular basis of protease-activated receptor 2 - evoked mechanical and affective pain. JCI Insight, 2020 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/23dbc60f-8a42-482d-8e74-6648ecc7ebcd/png_pain.png Publications ACE2 and SCARF expression in human DRG nociceptors: implications for SARS-CoV-2 virus neurological effects. PAIN, 2020 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/3596067d-aabe-4321-b5d3-1fafeec95345/png_bbi.png Publications A pharmacological interactome between COVID-19 patient samples and human sensory neurons reveals potential drivers of neurogenic pulmonary dysfunction. Brain, Behavior and Immunity, 2020 (first & co-corresponding author) https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/52b9b43c-4c35-4de2-bf19-448c04a21ec8/png_pain_cultured_drg.png Publications Pharmacological target-focused transcriptomic analysis of native versus cultured human and mouse dorsal root ganglia. PAIN, 2020 (corresponding author) https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/15463c79-b63b-4a8a-a8f5-c69e00b3f26b/png_diabetes.png Publications A Genetic Locus on Chromosome 2q24 Predicting Peripheral Neuropathy Risk in Type 2 Diabetes: Results From the ACCORD and BARI 2D Studies. Diabetes, 2019 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/f76fe112-9d28-485e-9486-adb04f268d52/png_opphysio.png Publications Review Recent advances toward understanding the mysteries of the acute to chronic pain transition. Curr Opinion in Physiology, 2019 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/927c005a-eadb-4153-a7f5-a7a5845c78d3/png_jneurosci.png Publications Differences between dorsal root and trigeminal ganglion nociceptors in mice revealed by translational profiling. J Neurosci, 2019 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/86171f6f-5d92-4b9c-b65e-8d289a695b94/png_frontiers_molneuro.png Publications Transcriptome analysis of the human tibial nerve identifies sexually dimorphic expression of genes involved in pain, inflammation and neuro-immunity. Frontiers in Mol Neurosci, 2019 (first & corresponding author) https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/e78c9cc1-4954-4f65-8000-771dca2ea986/png_brain.png Publications Electrophysiological and transcriptomic correlates of neuropathic pain in human primary sensory neurons. Brain, 2019 (co-first author) https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/cfed7572-58a7-4d76-be0f-6b5d826fd016/png_jneurosci.png Publications Nociceptor translational profiling reveals the RagA-mTORC1 network as a critical generator of neuropathic pain. J Neurosci, 2019 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/b5c3e683-52ac-4e3e-ae43-0dcd51ef3a97/png_jneurosci.png Publications Angiotensin II triggers peripheral macrophage-to-sensory neuron redox crosstalk to elicit pain. J Neurosci, 2018 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/0da2d48f-1724-4a5e-b8be-a0d8b357eabd/png_pain.png Publications Comparative transcriptome profiling of the human and mouse dorsal root ganglia: an RNA-seq–based resource for pain and sensory neuroscience research. PAIN, 2018 (first author) https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/1e98a1ee-43c1-420d-9f60-bab308b9d81c/png_acsneuro.png Publications Sigma 2 Receptor/Tmem97 Agonists Produce Long Lasting Antineuropathic Pain Effects in Mice. ACS Chem Neurosci, 2017 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/7deb8789-8ff4-46f0-a627-ef2fb73e044f/png_bioinfo.png Publications DIRECTION: a machine learning framework for predicting and characterizing DNA methylation and hydroxymethylation in mammalian genomes. OUP Bioinfo, 2017 (co-first & co-corresponding author) https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/adb9a8c3-fe5c-463b-a0dd-39c02105ca80/png_pain.png Publications Group II mGluRs suppress hyperexcitability in mouse and human nociceptors. PAIN, 2016 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/e9bce3c6-a31a-4448-90a8-3014ac89fd48/png_nature_epigenome.png Publications Integrative analysis of haplotype-resolved epigenomes across human tissues. Nature, 2015 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/b41d7b08-9401-42ba-a7a9-65358e0ca0a8/png_nature_epigenome.png Publications Integrative analysis of 111 reference human epigenomes. Nature, 2015 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/4b8ff9e5-a295-450f-9625-30b3f7aadb19/png_g3.png Publications Distinct and predictive histone lysine acetylation patterns at promoters, enhancers, and gene bodies. G3: Genes | Genomes | Genetics, 2014 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/d0e9be07-11f5-4e1f-9f97-bc9526f2f2a5/png_cell_epigenetics.png Publications Epigenomic analysis of multilineage differentiation of human embryonic stem cells. Cell, 2013 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/6db80dea-11be-489d-97c1-b8ef36848db6/png_cmu.png Publications Computational Methods for Analyzing the Architecture and Evolution of the Regulatory Genome, Tech Report, CMU-LTI-12-018, Ph D Thesis, Pradipta Ray https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/1d2e5e4f-298a-461f-97e2-d507288d5e99/png_bioinfo.png Publications DISCOVER: a feature-based discriminative method for motif search in complex genomes. OUP Bioinfo, 2009 (co-first author) https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/a7398af8-31be-4f65-825a-e31e379358a2/png_ploscompbio.png Publications CSMET: comparative genomic motif detection via multi-resolution phylogenetic shadowing. PLoS CompBio, 2008 (co-first author) https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/c87994f5-8ed1-4978-89bf-92724ad391ee/png_lnbi.png Publications Baycis: a bayesian hierarchical hmm for cis-regulatory module decoding in metazoan genomes. ReCoMB Proceedings: LNBI, 2008 (co-first author) https://www.pradiptaray.com/talks daily 0.75 2026-09-17 https://www.pradiptaray.com/talks-1 daily 0.75 2026-09-17 https://www.pradiptaray.com/publications-2 daily 0.75 2026-09-17 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/6fdb7519-b49d-43a5-8f35-8d41dbe4d3f8/png_new_scientist.png Press Map of pain neurons may lead to more effective drugs for chronic pain, Feb 2022 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/8d4309b1-2853-4cd3-9c72-06438d5fd8f3/png_sci_american.png Press What we know so far about how COVID affects the nervous system, Oct 2020 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/ce7b2a96-7262-4af3-8d66-91c11f4d1f6d/png_nature_news.png Press Why the sexes don’t feel pain the same way, Mar 2019 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/98ed9c5a-715b-4c9b-a45f-2f5aff42e137/png_wired.png Press Women's pain is different from men's, the drugs could be too, Mar 2019 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/f707f942-70b2-4cf3-a484-9e29eefe1621/png_la_times.png Press Roadmap Epigenomics Project reads between DNA’s genetic instructions , Feb 2015 https://images.squarespace-cdn.com/content/v1/68d6001b48dd875a7fd892db/76af711a-c4b4-4c18-9891-fbbc7575842c/png_science_news.png Press Massive project maps DNA tags that define each cell's identity , Feb 2015 https://www.pradiptaray.com/talks-2 daily 0.75 2026-09-17